Sequence already in BAR+ !

Cluster:Cluster identification, Annotations (GO,PDB,Pfam), Cluster HMM (when possible)
Query:Your input, Alignment to template/s (when possible)
SI:Pairwise Sequence Identity
COV:Overlapping of the pairwise alignment as defined in the Help
BLAST Match:Sequences that match your query, UniProt code (if available) or other description
cov:Overlapping of the PDB template over the query (if available)
id:PDB template/query sequence identity (if available)
- -
GREEN:Identical sequences
RED:SI ≥ 40% and COV ≥ 90%
GREY:SI < 40% and COV < 90%

ClusterQuerySICOVBLAST Match
Cluster-ID: 5516
No. sequences: 195
Average length: 712.0 (6.9% SD)
  • Eukaryota 195
Gene Ontology function (Total: 203)
Molecular Function: (Validated:6/18)
  • heparin binding
  • serine-type endopeptidase inhibitor activity
  • endopeptidase inhibitor activity
  • peptidase inhibitor activity
  • carbohydrate binding
  • enzyme regulator activity
Biological Process: (Validated:107/164)
  • smooth endoplasmic reticulum calcium ion homeostasis
  • calcium ion homeostasis
  • positive regulation of transcription from RNA polymerase II promoter
  • mRNA polyadenylation
  • copper ion homeostasis
  • axonogenesis
  • associative learning
  • cellular calcium ion homeostasis
  • regulation of transcription from RNA polymerase II promoter
  • axon cargo transport
  • mRNA 3'-end processing
  • cellular copper ion homeostasis
  • regulation of translation
  • epidermal growth factor receptor signaling pathway
  • neuron projection morphogenesis
  • skeletal muscle tissue development
  • cellular metal ion homeostasis
  • positive regulation of transcription
  • regulation of epidermal growth factor receptor signaling pathway
  • ionotropic glutamate receptor signaling pathway
  • transmembrane receptor protein tyrosine kinase signaling pathway
  • extracellular matrix organization
  • RNA 3'-end processing
  • neuron projection development
  • regulation of cellular protein metabolic process
  • regulation of phosphate metabolic process
  • mRNA processing
  • ion homeostasis
  • neuromuscular process controlling balance
  • cell morphogenesis involved in neuron differentiation
  • synapse assembly
  • generation of neurons
  • synapse organization
  • striated muscle cell differentiation
  • enzyme linked receptor protein signaling pathway
  • regulation of phosphorus metabolic process
  • regulation of transferase activity
  • axon guidance
  • nervous system development
  • central nervous system development
  • regulation of epidermal growth factor receptor activity
  • extracellular structure organization
  • neurogenesis
  • interphase
  • cell projection organization
  • cell morphogenesis
  • regulation of cell size
  • neuromuscular process
  • RNA processing
  • apoptosis
  • positive regulation of cellular biosynthetic process
  • phosphate metabolic process
  • mating behavior
  • neuron recognition
  • cell maturation
  • forebrain development
  • synaptic transmission
  • cell surface receptor linked signaling pathway
  • organ development
  • regulation of multicellular organism growth
  • cell development
  • suckling behavior
  • regulation of catalytic activity
  • transmission of nerve impulse
  • feeding behavior
  • midbrain development
  • adult locomotory behavior
  • synaptic growth at neuromuscular junction
  • response to radiation
  • endocytosis
  • regulation of cell cycle
  • homeostatic process
  • tissue development
  • neurological system process
  • programmed cell death
  • positive regulation of biosynthetic process
  • cellular component morphogenesis
  • regulation of cellular metabolic process
  • positive regulation of nitrogen compound metabolic process
  • positive regulation of cellular metabolic process
  • phosphorus metabolic process
  • visual learning
  • locomotory behavior
  • reproductive behavior
  • adult behavior
  • cell recognition
  • behavioral interaction between organisms
  • cell-cell signaling
  • anatomical structure development
  • response to abiotic stimulus
  • positive regulation of cellular process
  • regulation of molecular function
  • behavior
  • signal transduction
  • regulation of biological quality
  • cell adhesion
  • cellular component movement
  • cell death
  • system process
  • embryo development
  • positive regulation of metabolic process
  • growth
  • positive regulation of biological process
  • multicellular organismal process
  • reproduction
  • developmental process
  • multi-organism process
Cellular Component: (Validated:5/21)
  • integral to membrane
  • Golgi apparatus
  • insoluble fraction
  • cell projection
  • membrane-bounded organelle
Structural annotation (No. PDB: 8)
Pfam annotation (Total: 1)
  • beta-amyloid precursor protein C-terminus(APP_amyloid)
Cluster HMM
Download HMM
Q9DGJ8
2wk3C
672-695 (start-end)
3.5% cov | 100.0% id
1rw6A
365-569 (start-end)
29.5% cov | 100.0% id
3ktmA
18-189 (start-end)
24.7% cov | 90.0% id
1aapA
287-343 (start-end)
8.2% cov | 90.0% id
100.0100.0Q9DGJ8
Taxonomy: Eukaryota
Organism: Gallus gallus (Chicken)
Description: Beta-amyloid protein 695 isoform

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